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Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis cover
Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis cover
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Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis

Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis

16min |27/05/2025
Play
undefined cover
undefined cover
Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis cover
Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis cover
A Coffee with CompBio

Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis

Nine Samples and Zero Cells: A Week in the Life of Single-Cell Analysis

16min |27/05/2025
Play

Description

In our first episode, Alex and Lorena dive into the messy reality of processing single-cell RNA-seq data. What started as a simple QC project turned into a week-long journey across compute environments, mysterious pipeline errors, and zero-cell outputs. Along the way, we troubleshoot issues with Cell Ranger, uncover strange sequencing artifacts, and reflect on lessons in data handling, pipeline reproducibility, and client communication.


Follow us on LinkedIn: https://www.linkedin.com/in/lpantano/ and https://www.linkedin.com/in/alexandra-bartlett-926b32109/


If you enjoyed the episode, please subscribe and leave us a review.


Hosted by Ausha. See ausha.co/privacy-policy for more information.

Description

In our first episode, Alex and Lorena dive into the messy reality of processing single-cell RNA-seq data. What started as a simple QC project turned into a week-long journey across compute environments, mysterious pipeline errors, and zero-cell outputs. Along the way, we troubleshoot issues with Cell Ranger, uncover strange sequencing artifacts, and reflect on lessons in data handling, pipeline reproducibility, and client communication.


Follow us on LinkedIn: https://www.linkedin.com/in/lpantano/ and https://www.linkedin.com/in/alexandra-bartlett-926b32109/


If you enjoyed the episode, please subscribe and leave us a review.


Hosted by Ausha. See ausha.co/privacy-policy for more information.

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Description

In our first episode, Alex and Lorena dive into the messy reality of processing single-cell RNA-seq data. What started as a simple QC project turned into a week-long journey across compute environments, mysterious pipeline errors, and zero-cell outputs. Along the way, we troubleshoot issues with Cell Ranger, uncover strange sequencing artifacts, and reflect on lessons in data handling, pipeline reproducibility, and client communication.


Follow us on LinkedIn: https://www.linkedin.com/in/lpantano/ and https://www.linkedin.com/in/alexandra-bartlett-926b32109/


If you enjoyed the episode, please subscribe and leave us a review.


Hosted by Ausha. See ausha.co/privacy-policy for more information.

Description

In our first episode, Alex and Lorena dive into the messy reality of processing single-cell RNA-seq data. What started as a simple QC project turned into a week-long journey across compute environments, mysterious pipeline errors, and zero-cell outputs. Along the way, we troubleshoot issues with Cell Ranger, uncover strange sequencing artifacts, and reflect on lessons in data handling, pipeline reproducibility, and client communication.


Follow us on LinkedIn: https://www.linkedin.com/in/lpantano/ and https://www.linkedin.com/in/alexandra-bartlett-926b32109/


If you enjoyed the episode, please subscribe and leave us a review.


Hosted by Ausha. See ausha.co/privacy-policy for more information.

Share

Embed

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